Sam Yates
Sam Yates
We have no checkpointing support, but it sure would be good to have. Nothing concrete here on this issue: open to collecting comments regarding use cases, design ideas, etc.
When investigating another performance issue, it became apparent that setting up regular event binning with a bin dt of 0.025 ms produced many more integration steps over a 10 ms...
The set of possible cell kinds, and the mapping from cell kinds to implementations in cell groups, is all hard coded in the source. However if users are willing to...
LIF cells currently are unprobeable. Apart from the functionality itself, probe implementations on more than one cell kind will help ensure that the probe APIs remains general. Proposed probe types:...
Let's try [meson](https://github.com/mesonbuild/meson)! Dependencies are Python3 and Ninja, and in principle we can install it locally in our environments with Pip. In the first instance, let's just trial it for...
We have requests for voltage clamps! > espenhgn commented on Dec 1, 2020 > Please add a feature for voltage clamps which allows for arbitrary long sequences of piece-wise constant...
Motivating use case is single cell parameter optimization, together with the Python GIL slowing down Python-side recipe instantiation. This idea is inchoate, but the rough sketch: * Recipe takes a...
We don't have any library-supplied support for writing results out to files (or other consumers) as the simulation is running, and we'll almost certainly need this for large simulations running...
This splits out one aspect of the text representation issues raised in #952, namely the scope and implementation of such representations in the C++ library and API. Summarizing some of...
Putting aside the question of providing support for models describable in some subset of e.g. SBML 2, we should be able to more easily support explicitly compartmentalized cells with dynamics...