haianhle

Dear Vladim, I have a question regarding project specific spectral library for DIA runs on DIA-NN. Usually we generate these libraries by running fractions with DDA and then processing the...

@fcyu is analysis of SILAC samples possible for diaPASEF at the moment? Is the instruction available somewhere you could point me to? So far we've been doing this with DIANN....

Hi @fcyu and @anesvi, is there a way to get the intensity information for each peptide associated with each run from the output files like the one MaxQuant provides in...

@fcyu Fengchao, I don't have issue with zero intensity peaks, but I noticed that every precursor in spectral library (library.tsv) file has one with intensity 10000.0. What are these "library...

@vdemichev Hi Vadim, is there a way for DIANN to produce the log file when it does not run to completion? It would make retrospective analysis of past runs tremendously...

Hi Vadim, I'm very new to mass spectrometry and proteomics. It appears that mass calibration is done using some nonlinear dependency between retention time, m/z, but also peak intensity. So...