Mahendra Gaur

NCBI Data Download Error

1

```javascript E-fetching 6055 genbank records from BioProject PRJNA313047 and writing to. This may take a while. Parsing genbank records. 'NG_074760.1' Processing record 1 of 6055 (accession NG_074760.1) 'NG_074759.1' ..... Processing...

``` bash blab@blab:~/Desktop/Dehulajhari_HotSpring/qiime_analysis_F$ differential_abundance.py -i ucrss_iter/otu_table_mc2_w_tax.biom -o other_analysis/diff_otus.txt -m mapping.csv -a DESeq2_nbinom -c EC -x 0.019 -y 0.025 -d Traceback (most recent call last): File "/usr/local/bin/differential_abundance.py", line 5, in pkg_resources.run_script('qiime==1.9.1-dev',...

Error in loading classifier_all.rds data

1

> library(paprbag) > library(ranger) > # define your path to the previously saved forest > Path2Forest # define independent prediction data > Path2ReadFiles # define output > OutputFilename saveLocation Predictions_paprbag

VCFv4.2 is not a supported version

3

``` javascript $ java -jar VariantToolChest-0.9-SNAPSHOT-jar-with-dependencies.jar VarStats -i /home/blab/Desktop/matK/samtool_result/matK.raw.vcf -s T 2015-07-02 18:50:25 INFO VarStatsEngine:91 - Namespace(SUMMARY=T, association=false, VCF=[/home/blab/Desktop/matK/samtool_result/matK.raw.vcf], OUTPUT=null, pheno=null, DETAILED=null) 2015-07-02 18:50:25 INFO AbstractVariantPool:134 - Opening /home/blab/Desktop/matK/samtool_result/matK.raw.vcf for...

obminimize: could not setup force field.

2

## Environment Information Open Babel version: 3.1.1 Operating system and version: Ubuntu 20.04.6 LTS ## Expected Behavior ``` $ obminimize -ff -h ChEMBL_Phase4_Drugs.sdf ``` The above command should work with...

# Description Currently, ttclust does not provide an option to specify the number of CPU threads to use. And, by default, it uses all available threads. It would be helpful...

Missing Header and Log File in Metabuli Output

2

**Description:** Dear Developer Team, thank you for developing Metabuli, it has worked great with my test datasets! I recently tested the Metabuli app on ONT long reads against the virus...

Issue/Error in tRNAscan-SE running

4

I have installed bakta using the following command: ``` mamba create -n bakta -c conda-forge -c bioconda bakta ``` And the database was downloaded using the following command: ``` bakta_db...