Mahendra Gaur

icon indicating an email [email protected]

icon company Siksha 'O' Anusandhan (Deemed to be University) icon location Bhubaneswar, Odisha, India icon location I am a Computational Biologist. Doing work NGS data analysis using various tools.

Results 4 comments of Mahendra Gaur

Missing Header and Log File in Metabuli Output

> Thank you for giving valuable feedback with so many details! > > > The output file 2024-10-02_13-23-03_classifications.tsv does not have a header. > > I will consider adding a...

ValueError: invalid literal for int() with base 10: 'auto'

Downgrade your ttclust version to 4.10.3. 4.10.4 is in beta testing. With version 4.10.3, worked for me. ttclust -f ../md_0_100_noPBC_noWAT_noJUMP_fit.xtc -t ../first_frame.pdb -l ttclust_clustering.log -st "all" -sa "name CA" -sr...

ValueError: invalid literal for int() with base 10: 'auto'

Try this command. mamba/conda install -c tubiana -c conda-forge ttclust==4.10.3

ValueError: invalid literal for int() with base 10: 'auto'

> Hi, I have issued the command but after more than two hours it do not terminate. > > Saverio ![ttclust](https://private-user-images.githubusercontent.com/18366593/361862667-a5fc36e2-4f32-4762-bd95-b3b4097a5665.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.c9XeYooL2kCMsp3A1OGF9c-CQ2KJKwmWl_asVdVLChc) Switch from conda to mamba. Mamba is a fast,...