Grace Crandall

How to get genes from pycno genome?

21

want to be able to align sea star coelomocyte RNA seq data to the pycno genome. The files provided that I have access to are of transcripts. Wiki page of...

figures - multispecies

11

Making some figures for the multi-species project. There is no functional enrichment - I re-did it multiple times the past couple days to make sure I was getting the same...

GO slim?

37

I am hoping to get GO slims to categorize into higher level groups The link to one that I have from a long long time ago no longer exists http://owl.fish.washington.edu/halfshell/bu-alanine-wd/17-07-20/GO-GOslim.sorted

best way to get dominant go terms from an annotated deg list?

4

annotated deg list: https://raw.githubusercontent.com/grace-ac/project-pycno-multispecies-2023/refs/heads/main/output/33-annot-DEGlists/DEGlist_transcripts_pycno_controlVexposed_annot.tab?token=GHSAT0AAAAAADK5SSG2FOXVVDZP67CUF7ZE2IJK4LQ what's the best way to get the dominant GO term for each transcript? The column has lots of GO terms listed

pipeline for what doesn't align to a target?

5

wanting to see what doesn't align to seastar genome with my sea star RNAseq data