ggstatgen

Assembly review in Juicebox too slow - too many contigs in file 'final.assembly'?

5

Hi, I've completed a run of 3d-dna using as input a canu raw assembly obtained from 25x WGS mouse data and corresponding Hi-C. I am able to load the `final.hic`...

Can StringTie --merge be used to create a slightly improved reference annotation?

4

Hi The official dog gtf annotation on Ensembl V100 is missing some important genes. Interestingly, Ensembl also holds two other dog annotations, based on 2 different breeds. I would like...

Unable to complete detection stage

4

Hi I'm having problems to complete the first stage ('detection'). The code terminates with an exception. A bit of info to help you diagnose the issue. My command is as...

Unable to install

3

Hi Just cloned the repository and did a ``` python setup.py build python setup.py install ``` However I can find no executable anywhere I also tried `pip install rMETL` It...