ggstatgen

Results 4 comments of ggstatgen

Aligning contigs from deNovo Assembly with ngm-lr

Hi all, I am trying to do the same thing as OP and am stumbling in the same warning. `Warning: Couldn't allocate alignment matrix. Required memory (30689) > max matrix...

Assembly review in Juicebox too slow - too many contigs in file 'final.assembly'?

Hi Olga thanks for this I will test using your sample data and report back. Thanks for the advice regarding the final vs FINAL suffixes. One question I have is:...

Assembly review in Juicebox too slow - too many contigs in file 'final.assembly'?

Hi again Olga, So I tried opening the demo files as you suggested and the tool is still extremely slow. Definitely slower than what you show in the youtube tutorial....

Can StringTie --merge be used to create a slightly improved reference annotation?

Thanks so much for the speedy reply - will gladly test gffread and let you know how it goes for this on its github repo if needed!