Julia Varga comments

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                                            Julia Varga

Protein secondary structure & domain annotation

Thanks, that would be awesome and much needed! Maybe one more, that I usually miss from MSA visualization tools: the ability to highlight regions with either a) on one/few particular...

Feature request: sequence from uniprot id and residue numbers

That could also work. I understand that if you support one, people will probably start to ask for more. But having only to copy-paste a sequence and not finding the...

Where to issue SSH tunnel command?

Thank you, I realized I did not set port to 55556. Now it works! Is there a way to open a project via remoter or to see the files in...

Container for RStudio (not server)

Update: I tried the same, just switching from r-base to r-ubuntu image. It gives the same error.

Adding possibility for a collection of structures

In the same notebook, I have also implemented superimposition, using TMalign

installation issues - scripts/install_third_party_dependencies.sh

I also have similar problems. When trying to solve the environment, conda comes up with a very long list of conflicts. I am installing it on debian 11. Any ideas...

Errors with PAE matrix both with igraph and networkx

Thank you so much, this was such a silly mistake, indeed it works like a charm now!

Online colabfold can use PDB-s as templates, local cannot

Sorry, I forgot the version: I am "Running colabfold 1.5.2 (3e99c44eec189ec27f6d120af851adb7ff6aa2a2)"

Foldseek-multimer returns non-interacting chains

I do not think that this is not the same issue as #271 @milot-mirdita . The query can be found and the 3D viewer is showing the matches, however I...

Sample.fasta.temp.draft file not found

I encountered the same issue, with an installation that was working for years perfectly, so I am absolutely clueless on what could have happened... The above error comes when I...