Jan Gawor

no rRNA prediction using Barrnap

3

Hi, Thank you very much for great tool! I have encountered error when using DFAST for rRNA prediction - no rRNA genes in output. DFAST was run in debug mode...

fasta file with contigs is not created

3

Hi, Thank you for great tool! I have encountered problem with sprayandpray. When I run: spray-and-pray.py -g assembly.fasta -out endosymbionts_out -cd 0.5 -L 1000000 -perc 50 -ref /BLAST_database/nr_db/nr_diamond_db -Domain Bacteria...

charcoal analysis of single assembly file

3

Hi, Can I use charcoal to decontaminate single assembly file? I have eukaryotic genome assembly with potential microbial contamination. Unfortunately this is completely new eukaryotic species so I don't know...

Genovi installation problem

3

Hello, Thank you for a really great tool. I was able to install it on my laptop at home with Ubuntu 20.04 LTS but failed on Ubuntu workstations. In the...

ggpicrust2 installation issue - which R version should I use?

11

Hi, Thank you very much for such great tool for picrust2 results visualization. That is just I was looking for! May I kindly ask you how to install it properly?...