Jan Gawor

Hi, Now it works! Thank you! Please also add information to the instructions page that adding sprayandpray folder to the PATH is critical. The taxmap...txt file cannot be found by...

Hi, I have also noticed similar problem with lack of blast file using conda installation . Tried with nr BLAST db (diamond db was created by sprayandpracy or manually in...

I have run DFAST on multiple complete genome assemblies. Tried different DFAST versions and still there were no rRNA operons predicted. Interestingly I did one another test today: run barrnap...

OK. I did some tests on my side and have interesting observation. I have noticed that sometimes DFAST is changing input fasta file header in his working directory to empty...

Hi, OK. But can I run it without lineages csv file?

Hi, previously I have strictly followed the instructions and started from creating conda env before installing with pip. Today I repeated the installation procedure in the fresh conda env and...

Hello, thank you very much for detailed installation instructions. I get stuck on dependencies installation. What I did so far (using Ubuntu 16.04 LTS: 1) mamba create -y -n ggpicrust2_env...

Hello, Sorry for contacting you so late. I was not able to install it using mix of conda + R commands. Tomorrow I will try to install R packages only...