Felix Wiegand
Felix Wiegand
In our project we are using [vega-scale](https://github.com/vega/vega-scale) to generate heatmaps for numeric data. We managed to use a sequential scheme like `viridis` with ```scale = vega.scale('sequential').interploate(vega.scheme('viridis'));```. I can't seem to...
This PR adds improved visualization for clinical significance.
`alignoth` should display softclips with 50% opacity so they're distinguishable from regular matches.
Currently paired reads are always placed in the same row in the plot even if they overlap. ~If they do overlap the mate should be placed in the row below...
The embedded view should contain a list widget where the user is able to add reads by clicking on them in the plot. When selecting the read in the list...
There seems to be a problem when using the subsample option: ``` thread 'main' panicked at 'called `Option::unwrap()` on a `None` value', src/plot.rs:352:58 note: run with `RUST_BACKTRACE=1` environment variable to...
The html embedded plots should have a filter option that filters the alignment plots. This could be potentially solved with vega-lites own filter function so the filter ui will be...
When using `vl2pdf` the current specs throw the following error: `Error: CanvasRenderer is missing a valid canvas or context`. This can be currently bypassed by using `vl2vg | vg2pdf` but...
Hi @felixfbecker, Thanks for this useful library! When converting objects with rotation applied, the resulting SVG does not reflect the rotation. It appears that the SVG elements retain their default...
Alignoth currently only supports JSON and TSV output. This could be extended to CSV and parquet.