Francesco Patane, MSc

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icon company Immunobiology Laboratory - ULB icon location Bruxelles, Belgium icon location Biotechnologist. Keen on scientific programming and machine learning applied to drug discovery. PhD student at the University of Bruxelles

Results 3 comments of Francesco Patane, MSc

How to integrate-remove batch effects and assign cells

Thank you for the reply and for the valuable suggestion. In doing so, does azimuth perform an integration step? How can i align my samples? I feel confused

Problems when loading esm3 model

> Hi, when using esm3 model to generate embeddings, I face a new error: > > ``` > File "/gpfs/radev/scratch/ying_rex/tl688/esm3/esm/test_esm3.py", line 1, in > from esm.models.esm3 import ESM3 > File...

Suggestions for Utilizing hdWGCNA to Study Regulatory Network Changes between conditions

> Hi Francesco, > > Your idea makes sense, building separate networks and identifying separate modules, and then comparing them afterwards. This is what I did in a recent [pre-print](https://www.biorxiv.org/content/10.1101/2025.01.27.634744v1.abstract),...