feiranl
feiranl
There is a new function in cobratoolbox named as box.m, which would conflicts with the matlab built-in function box.m. **I hereby confirm that I have:** - [x] Tried to solve...
* verifyModel reports an error when I run:results = verifyModel(model_original,'simpleCheck',true,'restrictToFields',{'rules'}) error as below: ``` Undefined unary operator '~' for input arguments of type 'string'. Error in checkPresentFields (line 93) if...
1. I tried to remove the genes from the model and want to also remove the rxn related from the model if the grrule is empty. I am using the...
### Description of the issue: *Since YeastGEM also have Python users, it would better to also include a python function for anaerobic condition setup. The Matlab function for this can...
### Description of the issue: * Stoichiometry coefficients are missing in current GEM but available in Complex Portal and PDB database. Should we include this information and which field is...
### Description of the issue: * Model expansion to cover more volatiles as metabolites. **I hereby confirm that I have:** - [ ] Tested my code with [all requirements](https://github.com/SysBioChalmers/yeast-GEM#required-software---user) for...
### Description of the issue: * Some reactions in amino acid pathways do not reflect the correct compartments **I hereby confirm that I have:** - [ ] Tested my code...
### Description of the issue: * Gapfilling in polyphosphate metabolism **I hereby confirm that I have:** - [ ] Tested my code with [all requirements](https://github.com/SysBioChalmers/yeast-GEM#required-software---user) for running the model -...
### Description of the issue: * Rhea and ModelSEED IDs for both mets and rxns are missing from current model. **I hereby confirm that I have:** - [x] Tested my...
Compartment information should be corrected according to the latest annotation.