feiranl
feiranl
@BenjaSanchez Hi, I tried adding reactions from MNX and adding a reaction manually inputed, changing bounds, and reactions knocking out. Overall, it is great!. But the reaction knocking is circling...
I agree with Mihail. But here it is not just "copy". We get this stoi info from ComplexPortal and information from PDB database. The script extracts protein structures from PDB...
@Hao-Chalmers @edkerk, What about also updating MNX database info stored in RAVEN toolbox, since in some function, we relies on `mapIDsViaMNXref` to get IDs for other databases. Maybe user can...
This update of MNX(4.0) updated so many IDs(including many basic chemicals such as water O2 and NH4+), if we only keep the latest 4.0 version, which may cause the function...
Yes, I will find the data. Will get back to you soon.
Reactions from [this paper](https://www.mdpi.com/2227-9717/8/9/1195/htm) should also checked and curated into the Yeast8?
also here in MetaCyc: [2.1.1.63](https://metacyc.org/META/substring-search?type=NIL&object=2.1.1.63+)
> Great job! I've left some aesthetic comments. > > In terms of the bigger picture, what is the aim here? To be able to run this once, now and...
@JHL-452b Could you address this?
During check, I also identified the duplicate mets in Peroxisome compartment, should we also fix this? Metabolite | ID in “Low-Resolution” Pathway | ID in “High-Resolution” Pathway -- | --...