hong.fei
hong.fei
@voutcn i need your help
yes，it‘s very usefull ，because bams have diff @RG，
> It currently does not, but I can add it if there's a need. I think it'll be need for fastq filtering
hi sir： "--downsample“ is default=0，Time=3day。can you add multiprocess in python script for speed？
hi sir: thank you for your help very much. my teacher want to use your software to get ecDNA in our projects. so i need more detailed information about this...
hi sir: Our team is working on cancer research. I read a nice paper from your team :"Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity". many samples in our...
hi sir： Another naive question： #--------------------------------# 4) Visualizing reconstruction: Alternatively, the user may run the visualization tool locally on port 8000 using the following commands: export FLASK_APP=$AA_SRC/cycle_visualization/web_app.py flask run --host=0.0.0.0...
hi sir： dose the “amplified_intervals.py” script only work on hg19？ so chr column of my cnv.bed do not have string of "chr" will be error ?
but MHL was designed on MHB which contain more than 3 CpG sits. so I'm wondering weather MHLs based on a CpG sits are different with MHLs based on MHB
I read Scherer's paper just now. whether PM and ME only are calculated based on the 4-CpG window? if the CpG number is more than 4 in a block, should...