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Why does `sambamba sort` give me a different sort order across multiple runs (on the same BAM file)? Isn't `sort` by coordinates determinstic?

2

Running `sambamba sort` on the same BAM `input.bam` file gives me differing results from one run to another. Is this expected behavior? I'm not sure what's causing this but the...

"lib is not writable" error when installing several packages

1

When I run `pacman::p_install("Rserve", "som", "ROCR", "KEGGgraph", character.only = T)`, I get the following error: > Warning in utils::install.packages(package, ...) : > 'lib = "ROCR"' is not writable Interestingly, when...

xcms3 -- Error in x$.self$finalize() : attempt to apply non-function

17

I got this error when running the following line of code: `bpis

Remove features found in blank/QC/wash samples from the main samples

4

I am not sure how practical this is (#132 made me think of it); would it be possible to implement a function that would remove features found in `blank` and/or...

I have an image that has only one number in it. https://cloud.google.com/vision easily detects the text in the image and returns it. But RoogleVision (getGoogleVisionResponse) returns this message: **No features...

Determining the number of xcms runs and DoEs for an optimization run

1

I read in issue #39 that for the optimization of three parameters, xcms is called 17 times in each DoE. How is the number of xcms runs calculated according to...

stop worker failed, Error in serialize, error writing to connection

1

I have used `IPO` before, but this is the first time I am seeing this error. I have 26 files in `data` and the machine I am working on has...

MZ_CAMERA -- Error in FUN(X, Y, ...) : object 'res' not found

3

Jan, first of all, thank you for the extremely useful package. I am experiencing problems when using the MZ_CAMERA function. I am not sure whether I am using it in...