etrh

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Why does `sambamba sort` give me a different sort order across multiple runs (on the same BAM file)? Isn't `sort` by coordinates determinstic?

@mschilli87 I just converted two of the BAM files in question into SAM and the resulting MD5sums (`md5sum converted_input.sam`) were exactly the same as `samtools input.bam | md5sum`. In other...

xcms3 -- Error in x$.self$finalize() : attempt to apply non-function

Just to update on this, today, I came across this error again. But this time when executing the `findChromPeaks` function. Maybe this information will be useful later on when looking...

xcms3 -- Error in x$.self$finalize() : attempt to apply non-function

I also believe this is not really an error and it is safe to ignore it. I have been seeing this error a lot lately, and under different circumstances, for...

fitgauss affects peak picking

Can `fitgauss` ever lead to missing high-quality peaks? I am wondering why, for example, in the plot below I am not detecting the same exact peaks in some samples while...

fitgauss affects peak picking

Thank you for your prompt reply. I performed peak detection on an `XCMSnExp` object. ``` raw_data

Can't download the databases of python bivittatus while using snpEff download

https://github.com/pcingola/SnpEff/issues/503

MZ_CAMERA -- Error in FUN(X, Y, ...) : object 'res' not found

Thanks a lot. It works without a problem now. I would just mention one small detail that might be useful for people in the future who will be looking at...