stollec

what are the exact parameters of the presets

3

Hi there I am using ngmlr with some raw nanopore reads and its working fine with "--presets ont", However, my average readlength and coverage is not too great, so I...

Hi there I was running an older script which previously worked, but now threw an error at the step when I use vt sort on a VCF file: vt sort...

Hi there I am trying to use NCBI RefSeq GFF or GTF files and need to reformat them as other tools such as EvidenceModeler are complaining. I managed for the...

Hi there I ran into this error now, when using srf: ``` srfutils.js enlong $REF.srf.fa > $REF.srf.enlong.fa $/usr/bin/env: k8: No such file or directory ``` Easy fix was to get...

compleasm output also cds nucleotide sequences for the final set of genes

3

Hi Thank for this great software. not a bug but a question/enhancement request: Is there a way to also output the coding sequence for each final BUSCO gene? This would...

integration of compleasm as alternative to BUSCO

1

Hi there, I was wondering if there is plans to integrate compleasm as an alternative to BUSCO, since its running 10x faster. It can produce a BUSCO-formatted output table

runtime in TEstrainer ultralong for *some* genomes

6

Hi, After running EG with v4.2.4 for a while without major problems, we upgraded to 4.4.0 recently and have a couple issues. It seems one issue is with TEstrainer where...