stollec

The organism is the honeybee (Apis mellifera, 230 Mb genome, 2 versions I compare to: one older scaffold assembly which is not too bad over all, and since few weeks...

I have the same error about bioperl "ERROR: Bio::Perl not installed, install with cpanm Bio::Perl" I installed Funannotate via conda (current version, v1.8.9) I then tried to install Bioperl manually...

The BioPerl error can be fixed like this (at least in the conda env): activate the funannotate environment ``` cpanm --force Bio::DB::GenBank cpanm Bio::Perl ```

i have the same issue. The INSTALL instructions are really rudimentary for the important parts. I dont know how, I have a configure file now (i typed autoconf which only...

I was just running into the very same problem. In the end I used one of the many bamtools installations coming with another tool (in my case bedtools or WHAM)....

i just noticed another detail which make it a bit difficult to extract the single copy gene CDS from the GFF files. out of >5300 genes in the Hymenoptera ODB10...

thanks for the pointer. Indeed the full table has some info I can use and I think I can get the info I need now. Yet, if compleasm internally would...

One of the species which took extremely long but eventually finished after 10 days @ 25 threads: Bombus hypnorum: GCA_911387925.2 with EG v4.2.4 with RM 4.16 it took 33 hours...

Hi, We have not yet run these separately in RM to test this but will try now. FOr the TEstrainer elongated runtimes ... it seems a bit random, they are...