Eman Khalaf
It was version incompatibility. I updated R version and installed metacoder in Ubuntu now. I will check for windows and see. Much thanks for your support!
I did the following: ```r my_table
It is feature table with taxonomy as txt file then I converted it into csv. So, the first row is the header including taxonomy, S1, S2,.... Then, the row names...
@zachary-foster Thank you so much! Now it works. I exported the file as tsv and deleted the extra taxonomy column.
@benjjneb I tried the regular workflow for fastq files here https://benjjneb.github.io/dada2/tutorial.html#track-reads-through-the-pipeline and it worked but I want to know **is it okay since the files are fastq.gz**? Also, I have...
@benjjneb I ran the same workflow on another set of sequences (another project) since the output sequences that I obtained from qiime2 has a poor taxonomic resolution (majority assigned to...
@benjjneb Many thanks for your recommendations and help! Is there any other issue with running the R worfklow that you are having at this point? The workflow is running well,...
@benjjneb Many thanks for your recommendations. In case the reformatting of the names has introduced discrepancies between samples, how could I solve this problem. Is it acceptable to rename the...
@benjjneb Much thanks for your suggestion! I will try this and let you know. I have another question relevant to Phyloseq object manipulation. I already extracted sequences from the object...
@benjjneb Much thanks for your support and help!