Eman Khalaf
@benjjneb Thank you for your reply. `This warning did not come up in learnErrors?` No. `What was the exact dada call that produced the warning?` Please see below: `dd
@benjjneb 23.8 MB is the size of the sequence table output from the denoising step. Is it reasonable for this step?
@benjjneb `dim(seqtab) `is 1019 6907 (1019 samples having 6907 sequences) `summary(nchar(getSequences(seqtab))) ` Min. 1st Qu. Median Mean 3rd Qu. Max. 1302 1412 1437 1434 1462 1596
Unfortunately, not yet. I hope if any of the active members of the forum could help! On Tue, Jan 28, 2020 at 6:10 PM PuspenduSardar wrote: > Hi Eman, >...
@benjjneb Since I have this: ``` filts2
@benjjneb It worked with `learnErrors` but aborted with `dada` `dd
@benjjneb The reason behind using `pool=TRUE` is that I tested both pool=pseudo and pool=TRUE for subsets of samples (each from a genotype) and I found a slight difference in the...
@benjjneb Will do! Thanks so much!
@benjjneb Do you think Colab would work for this big number of samples?
@benjjneb Google Colaboratory "Colab" is a cloud-based Jupyter notebook environment. Sorry for asking so many questions, and thanks so much for your advice and support.