Dr. Ellen L Bouchard

icon indicating an email [email protected]

icon company Oregon Health & Science University icon location United States icon location Computational Biologist in the laboratory of Dr. Bahareh Ajami at OHSU. Experienced in single-cell multi-omics, neuroinflammation, and neurodegeneration.

Results 4 comments of Dr. Ellen L Bouchard

Issue with loading old liger object via convertOldLiger function

Thank you very much for the quick response and helpful resources! I will try that and add an update here with the outcome. UDPATE: I was able to easily generate...

All "Go to App" buttons time out on HuBMAP page

I have had the same issue. I've also been using the web app because my attempts to download and use the package have failed due to dependency issues. It would...

All "Go to App" buttons time out on HuBMAP page

Update: The web app appears to be working again (at least for PBMCs). I have not tried using the app but it is at least loading.

Error while using LoadH5Seurat : "Error in sparseMatrix(i = x[["indices"]][] + 1, p = x[["indptr"]][], x = x[["data"]][], : 'p' must be a nondecreasing vector"

@martina-morchio I never was able to get the LoadH5Seurat method working, but I did get anndata working. Here's a toy example: data_h