Elizabeth Perl

[Fix]: Fix workflows to use docker image & fix build-ss3-warnings.yml

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### Issue description Need to fix the workflow files after Johnoel's branch is merged. @Rick-Methot-NOAA I added this to the change-log so that we know to include in the next...

Release v3.30.22.1 checklist

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# Release checklist ## Checklist to get ready for release - [x] SS3 testing and debugging completed (RM and IT) - [x] Check artifact from the `call-build-ss3-warnings` GitHub action for...

[Feature]: Log scale outputs

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### Describe the solution you would like. Producing log scale outputs for approaches like MVLN is a feature that some users would find useful. See [APPROXIMATION OF KOBE POSTERIORS FROM...

### Issue description I have reviewed the stock-synthesis repo labels and saw that some don't have issues/PRs linked or have very few. Thought a review of the current labels might...

Annual storage of natM was completed with pull request #302 as a first step in transitional SPR. transitional SPR calc needs access to Z_rate, natM, N, fec by t,p,g add...

[Feature]: Change all instances of gender to sex

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### Describe the feature request. Change gender to sex in code following issue [#516](https://github.com/nmfs-stock-synthesis/stock-synthesis/issues/516) in the stock synthesis repository. Instances can be found searching though [this quick search of gender](https://github.com/search?q=repo%3Ar4ss%2Fr4ss%20gender&type=code)....

[Feature]: Surplus production vs. biomass plot

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### Describe the feature request. Requested by @akatan999 in ss3 discussion [here](https://github.com/nmfs-ost/ss3-source-code/discussions/565#discussioncomment-8408231): Following recent paper (https://cdnsciencepub.com/doi/pdf/10.1139/cjfas-2022-0168), it would be better to plot Surplus production vs. spawining stock biomass instead of...

[Bug]: Re-run simple small file with v.3.30.22 exe

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### Describe the bug Simple small file needs to be updated, maybe add an r-script ### To Reproduce NA ### Expected behavior Should be upated to v.3.30.22 ### Screenshots _No...

[Feature]: Might want to add mature_num and mature_bio for time-series plots

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### Describe the feature request. Might be good to add mature_num and mature_bio as an option for r4ss time-series plots. Stock Synthesis [issue #502](https://github.com/nmfs-stock-synthesis/stock-synthesis/issues/502#) [Stock Synthesis branch associated with issue](https://github.com/nmfs-stock-synthesis/stock-synthesis/tree/502-feature-add-mature_num-and-mature_bio-to-the-time_series-table)...

[Feature]/[BUG]: SS3 expanded output for SPAWN_RECR output table (SS3 added a,b formulation)

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### Describe the feature request. Add capability of `SS_output()` to read the expanded output of the SPAWN_RECR output table (see ss3-source-code issue [#191](https://github.com/nmfs-ost/ss3-source-code/issues/191#issuecomment-2159045859)). In attempting the [example that Rick attached...