Dennis R Kennetz
Dennis R Kennetz
@marcus1487 I can comment that this is not only for RNA, I have a DNA run with several very long reads > 10 over 200kb and about 1,000 over 100kb....
Hi marcus, thanks for the above post. I think the best practice for this in the future will be to drop reads >100kb in the future. As for now, my...
Check this out, was a monster of a run but it successfully completed. The longest read length in this run was ~300kb and I'm not sure if the alignment was...
@RobotSail Hi. Client should be an interface to a `client` which implements the methods. That would solve all your testing problems. Then you could just setup a mock on your...
The goal of mock's is never to test an API call, it is to ensure that changes in internal software don't break your code. They provide fast iteration if you...
Sorry for the lack of clarity in my original post! I'd be happy to do that. Maybe I'll start with a small one as an example, and if we're happy...
Thanks for the response, this has been my workaround for the above example. However, if the awk command contains quotes itself: `baseCommand: [awk, "'{$5=$6=$7=$8=""; print $0}'"]` cwltool fails causing cwlexec...
What should we do as a replacement for this?
I can take this one.
@JulioCVaz this one hasn't been implemented yet, but if you solve any challenge we've already posted under the "challenges" folder, we'll accept them with the hacktoberfest-accepted label and they'll count....