dodofly
dodofly
Then how TPMCalculator identify gene copies? Here my GTF record only the first row's feature is "gene" others are "transcript" And I can't see anything special of last 2 transcript...
Same problem here. I am sure there is no such csi file before running smoove, but still this error happens.
I want to do somatic sv analysis, so I run tumor-normal paired sample, my commend is: ```bash smoove call --name ${case_id} --exclude ${bed_path} --fasta ${grch38} --processes 6 --outdir ${smoove_dir} \...
No, their SM tag is different. Tumor is "${case_id}T" normal is "${case_id}C".
Yes, but I don't want to paste log message here, can I send to your email?
Hello @cidule remove `-d` to solve this problem.
@serge2016 hello, use `bedtools merge` command to merge overlap ranges.
Hey, this bug still exist in v0.3.6? still can't use `ids=`.
You can use `exiftool` or `tifffile` to check your WSI file.
> I dont know but it seems that conda installed a wrong version of h5py for me ... What's your version of h5py? Does it work? My `h5py` version is...