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verified publisher icon Boyle-Lab

GRCh38 blacklist contains overlap in bed file

Open dodoflyy opened this issue 5 years ago • 2 comments

For example

chr16   34586660        34587100
chr16   34587060        34587660

chr20   31067930        31069060
chr20   31069000        31069280

This will cause same tools error, for example bamCoverage of deeptools.

dodoflyy avatar Nov 03 '20 02:11 dodoflyy

Hello. Any news here?

serge2016 avatar Feb 17 '22 16:02 serge2016

@serge2016 hello, use bedtools merge command to merge overlap ranges.

dodoflyy avatar Feb 18 '22 01:02 dodoflyy