diego-rt
diego-rt
But do you think it is realistic to aim for T2T and go through centromeres and other complex repeats without considering phasing? Would you run a species with this k-mer...
Oh I see... Alright great, thanks a lot! And regarding the ultra long nanopore reads, do you have any recommendations in terms of what coverage to aim for? And just...
Ah fantastic, thanks a lot! This is super helpful. And regarding the bloom filter, would `-f 40` be adequate for a 32 Gbp genome? Or how can I estimate what...
Great to hear and thanks a lot for the quick reply! Here goes the full log. Thank you! [HMMRATAC.log](https://github.com/macs3-project/MACS/files/14397570/HMMRATAC.log)
Hi @HalfPhoton , Yes indeed I'm using nextflow with only one thread and 3G memory. I think the issue is that I've heavily parallelized it and have several hundred jobs...
Sure! We are uploading the files and will send them to you by the end of the week. Thanks!!
@chhylp123 @lh3 Or alternatively, if hifiasm could output the order, orientation and coordinates of the unitigs used to generate each contig/haplotig, it would be super helpful for curation. In other...
Amazing, thank you so much @chhylp123 !!
Hi @HalfPhoton @tijyojwad I don't think it has been fixed yet. I'm using dorado 0.7.3 and I can confirm it's still a problem. If you are referring to the fix...
Hi @HalfPhoton @tijyojwad I'm experimenting with the idea suggested by @ekg but I need some guidance on what is the expectation from dorado's side on how the PAF file should...