diego-rt
diego-rt
**Describe the bug** Hi, for some reason we are getting negative values in the peak column of the narrowPeak file from our data (see image attached). This is probably due...
Hi, I'm working with genome of 32 Gbp and have so far failed to run Quast on it. This is the error I get: ``` /Apps/quast-5.1.0rc1/quast.py -r Amex_6.0_M.fa --features gene:Amex_6.0_M.gtf...
I'm working with an organism with a very large genome and thus I require the use of a CSI index. However, when I pass HMMRATAC my csi index, it complains...
Hi again, Apologies for opening a new issue but this time it is on a different topic. We are trying to assemble a giant genome of ~30 Gb using 70x...
Hello, I was wondering whether there are any plans to incorporate support for Pore-C data instead of HiC for phasing? I assume the multiway contacts and longer fragment lengths would...
Hello, I'm working with a single cell ATAC dataset in an organism with a very large genome (32 Gbp). Therefore, the number of reads is quite high ~300M and I...
Hello, I'm trying to assemble a giant 29 Gb genome using flye and approximately 18x coverage of Nanopore UL reads. While disjointigs were assembled successfully, the subsequent step failed because...
Any chance Rsamtools will support CSI indexes anytime soon? We have a genome with multigigabase size chromosomes and many R packages cant support it ultimately because they rely on Rsamtools...
Hello, When running `pod5 filter` I often get a freeze for the process in a random manner. Rerunning it usually results in successful completion. It is annoying because it does...
Hi @marcelm I'm using cutadapt 4.4 with python 3.10.12 and I'm stumbling into this error when trimming the ultra long ULK114 adapters from a specific ONT Promethion flowcell. I'm wondering...