dgoekbuget
dgoekbuget
As suggested, I tried running just hiccups with "-c 1" and without 1000. It gave the same error. Then I tried running pre as well with those settings and now...
A .hic file was generated for "-c 1" option above, but size was a few hundred bytes and "pre" finishes after 10 seconds. The genome is mm10.
Ok. Yes I used `-c 1` and also just tried `-c chr1` with HiCCUPS (just tried in parallel with "pre"). Unfortunately, it also resulted in error below. HiCCUPS generates two...
It hasn't crashed and still runs, which is promising.. will report back when done.
Program still running, and I see a bedpe file appearing in folder, which wasn't there before. 1 and 2.5 (which is seemingly displayed as 3) resolutions look fine to me...
Update on `"$juicer_tools" hiccups --cpu --threads 0 -r 5000,10000 "$infile" "$ workdir"/hiccups` It seemingly ran successfully.
Any advise on how to run the original command successfully? `"$juicer_tools" hiccups --cpu --threads 0 -k KR -f 0.1,0.1,0.1,0.1 -r 1000,2500,5000,10000 -i 10000,20000,30000,40000 -d 2500,5000,10000,20000 -p 4000,10000,15000,20000 "$infile" "$workdir"/hiccups`
Also not working for me.
True, that version works.