derollins

Different processing success rates with different numbers of cores

2

## Checklist Please try and tick off each of these items when filing the bug report. There are further instructions on each below. * [x] Re-run analysis with `run_topostats --core...

**Is your feature request related to a problem? Please describe.** There is a growing number of output files generated at various stages, these images take time to generate and also...

Take .npy arrays as inputs for reprocessing without filters step.

2

**Is your feature request related to a problem? Please describe.** The filtering, flattening, scar removal stage of spm image processing is by far the longest although the hardest parameters to...

Split config file into advanced and basic setting

2

**Is your feature request related to a problem? Please describe.** Aid usability by splitting 'basic' functional settings and 'advanced' parameters. **Describe the solution you'd like** Here is my idea: ```...

[Bug]: Get an error saving the height profiles when saving grains but not tracing (`disordered_tracing` set to `false`)

2

### Checklist - [x] Find the offending file in the output. If processing halts, re-run analysis with `topostats --core 1 process`. - [x] Describe the bug. - [x] Include the...