Denis Torre

icon indicating an email [email protected]

icon location New York, NY icon location Memorial Sloan Kettering Cancer Center

Results 13 issues of Denis Torre

Provide alignment summary in RNA-seq preview

Prevent selection of same GTEx sample in two groups

https://github.com/MaayanLab/biojupies/blob/31046dcd8bd3d2674587a6654591552c36e08a40/website/app/templates/analyze/gtex.html#L171-L303

Capture methods for uploaded FASTQ files

Automatically assign minids to newly generated notebooks

http://minid.bd2k.org/ https://github.com/fair-research/minid

enhancement
FAIR

Plugin Ideas

- [ ] GeneMANIA Network - [ ] WGCNA Analysis - [ ] Timecourse analysis - [ ] Developmental trajectory (e.g. monocle) - [ ] Multigroup-pathway analysis

Update library size analysis for aligned data

Stacked bar chart showing pseudoaligned and not pseudoaligned data. Show values in the tooltip.

Add Color By option to PCA

plugin enhancement

Gene Expression Boxplots

new plugin

Automated conversion of Gene IDs

plugin enhancement

Weighted Gene Coexpression Network Analysis (WGCNA)

new plugin