Denis Torre comments

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                                            Denis Torre

Dockerfile for maayanlab/biojupies-notebooks image

Hi Upendra, The Dockerfile and other files required to build the image are available at https://github.com/MaayanLab/biojupies/tree/master/docker. Feel free to let me know if you still encounter any issues. Denis

Human gene symbols are converted to uppercase

Thank you for the feedback! Did you encounter the issue in a downloaded gene expression file, or in one the plots displayed in the notebooks? If so, which plot(s)? Feel...

Human gene symbols are converted to uppercase

It does indeed happen in the ARCHS4 pipeline, thank you for pointing it out. We will fix this in the next ARCHS4 version (v7) - I'll update the issue as...

Add metadata entry form and instruction on how to make uploaded datasets FAIR

Added metadata entry form, working on FAIR instructions.

Add progress bar for the alignment process

@lachmann12 is it possible to estimate alignment time of a FASTQ file from its size?

Only two classes in many GSEs - suggestion of enhancement

Thanks for the suggestion, @lubianat! I will look into adding this functionality soon.

Differential Expression Table shows max 10,000 genes

Did you try downloading the expression matrix from the user dashboard? If so, how many rows does that file contain? The observed difference is likely due to the fact that...