decenwang

Error: Cannot create zero-length unit vector ("unit" subsetting)

1

Hi Dr. Yu, When I re-run the "10.1.1 facet_widths" [https://yulab-smu.github.io/treedata-book/chapter10.html#facet-utilities](url) command line is "facet_widths(p2, widths = c(1, 2))"', which leads to the error. I tried to search the solution with...

top() lacks the "unique" functionality

2

Hi Dr. Nazarov I found another bug, may not a bug? Could please help check? When I use the top() function, I set ".n" = 50, however, in some sample,...

Unknown group "NA"

6

Hi Dr. Nazarov, When I plot by grouping method (.by = "group"), however, there is an unknown group NA existing in my graph. pleas see attached. I checked my metadata,...

definition request

2

Hi Dr. Nazarov, Forgive my unwiseness, I am still puzzled by some definitions, e.g. in repOverlap() fucntion, [https://immunarch.com/reference/repOverlap.html](url) **step** | Either an integer or a numeric vector.In the first case,...

finding non-productive sequences(original/no hypermutation/no insertion/no deletions)

2

Hi Quentin, According to your published article, How could you find out and extract the non-productive sequences (for new model construction) from the raw data? Do you have any good...