decenwang

> Hi @decenwang > > Thank you so much for this questions! This is a very important note to have in the documentation. `top` takes the top-N abundant clonotypes by...

> Hi Decen! > > 1 & 2. Yes, so in short you apply repOverlap at the the very first N clonotypes, where N is incrementally grows by .step. If...

Hi there, You may use the other software (not mixcr) to generate the CDR3s. First, it is a probabilistic inference, so we get the best two or more segments. I...

and I did not find the solution in the issue 7 [https://github.com/immunomind/immunarch/issues/7](url). the command I used is very similar as you posted. Although I may use ggplot2 to re-plot, I...

> @decenwang > > Thank you SO much for the such detailed issue ticket, with all the plots and data attached! I hope you won't mind if we will use...

Hi Dr. Nazarov, Thanks a lot for quick reply. Yes, the code for length distribution is: >imm.data_0.001_freq_distribution_aa vis(imm.data_0.001_freq_distribution_aa, .by = "Status", .meta = mm.data_0.001_freq$meta). In general, if I compare two...

 like this figure, I made it on purpose. on the top, P-value bars cover more than half.

Hi @qmarcou in your comments, you mentioned: > The log likelihoods are given in the likelihoods.out along with the number of sequences for which at least one scenario has been...

Hi Quentin, @qmarcou Thanks for your reply. I think you are right. Anyway I have another idea. primer -dependent bias is innate for primer pairs(bias 1). different sequencing technologies will...

Hi All, @qmarcou @penuts7644 1. Another question. when I input the sequences in fasta format by 'igor -read_seqs' command line, but I did not assign the index for the sample....