Daniel Danciu

When connecting to my dask cluster using ```python cluster = HelmCluster(release_name='foo') ``` I kept getting the following error: `ConnectionError: kubectl port forward failed`. After debugging a bit, it turned out...

Add checkpointing to metagraph build

12

As discussed via chat, there are multiple checkpoints after each major operation: generate kmers, generate reverse complements, splitting into chunks, generate dummy1, concatenate chunks, generate dummy2..k. The client interface exposes...

We would like to run our own template server and for this we need the `pdb70_cif.ff{data,index}` database. Would you be able to either share the existing database that you have...

[BUG] `PanderaTransformer::to_python_value()` seems to be returning an incorrect type

2

The return type of the `to_python_value` of the pandera type transformer seems incorrect. Currently, the returned type is `pandas.core.frame.DataFrame`, but the declared return type is `pandera.typing.DataFrame`. I suspect this is...

Fix return type in `PanderaTransformer::to_python_value()`

3

Return an object of the correct type in the `to_python_value` of the pandera type transformer. Currently, the returned type is `pandas.core.frame.DataFrame`, but the declared return type is `pandera.typing.DataFrame`. I suspect...

While poking around the repo I noticed the tests were broken, so I fixed them. While I was at it, I also replaced the deprecated os.path with pathlib.Path for file...

Google Cloud: creating a cluster fails, as the toil_leader has incorrect hostname

1

Creating a toil cluster on google cloud with a command like: `toil launch-cluster --provisioner gce --leaderNodeType n1-standard-1 --keyPairName --zone europe-west6-c` fails because the docker instance on the toil_leader machine can't...