cssulliv

Similarity error count discrepancy with other aligners

2

Hi, Summary: I had noticed a discrepancy in the quantified basepair differences between 2 metagenome-assembled genomes (MAGs) by pyANI via the Anvi'o software using the ANIm method when compared to...

Installing FastANI on local computer (Mac OSX)

3

Hi, I am trying to install the latest FastANI release. I downloaded the tar.gz file just fine using this script: `wget https://github.com/ParBLiSS/FastANI/releases/tag/v1.1/fastani-OSX64-v1.1.tar.gz`. But when I try to run `tar -zxvf...

Help interpreting data in krona graph

1

Hi, I recently ran metaQUAST to compare my contig assemblies (MEGAHIT vs metaSPades) and part of their script incorporates krona graph outputs. In any case I got the following result...

Error during metaspades error correction only step-Finished abnormally, err code: 1

4

Hi, I am currently using metaSPades v3.12 on our linux server and was running it only for error correction for 2 metagenomes. One of the genomes successfully got error corrected...