Cyril Pommier

Results 33 issues of Cyril Pommier

When searching for list of germplasms, we should know if that plant material can be ordered in the genebank. the easy approach would be to add an available field, but...

Currently, trial has many studies and one study belong to a single trial. As mentioned, trial can be mapped to other concepts in other systems, and in particular to project...

Modify Data Model
BrAPI-Core

We have search/observationUnit/table but the return is a JSON that has to be parsed priori analysis. the same with return type text/csv will ease adoption for breeding analysis using R.

New Endpoint
BrAPI-Phenotyping

each germplasm can have several descriptive pictures (grain, leaf, flower, ...) we could add the following structure to germplasm: ```` "medias": [ { "mime-type":"", "file": "https://urgi.versailles.inrae.fr/files/siregal/images/accession/CEREALS/6027_Mult13_Epi.jpg", "copyright": "INRA, 2013", "name":...

Modify Data Model
BrAPI-Germplasm

Curently in [study](https://github.com/plantbreeding/BrAPI/blob/brapi-V2.1/Specification/BrAPI-Core/Studies/Schemas/StudyNewRequest.yaml) and [germplasm](https://github.com/plantbreeding/BrAPI/blob/brapi-V2.1/Specification/BrAPI-Germplasm/Germplasm/Schemas/GermplasmNewRequest.yaml) the documentation url field is described as : ``` documentationURL: description: A URL to the human readable documentation of an object format: uri type: string...

Modify Documentation
BrAPI-Core
BrAPI-Germplasm

There are situation where you can have multiple crops per observationUnits. See related discussions in MIAPPE https://github.com/MIAPPE/MIAPPE/issues/4 For instance, you could study the interaction between advantices and crops or the...

Modify Data Model
BrAPI-Phenotyping

Add Variable description. See #66 Give full Variable ID naming recomendation (ASCII, no special characteres, no spaces) Make the Scale an explicit UNIT placeholder (barely understandable for now)

priority

Currently, each factor must have at least two modalities. IE: Factor watering, modalities rainfed watered. For some agronomic studies, there could be only a single modality per factor. IE study1...

enhancement
priority