Colleen Xu
Colleen Xu
**Is your feature request related to a problem? Please describe.** See the DisGeNET associations (OWL classes) hierarchy [here](https://www.disgenet.org/dbinfo#section5) and [here](https://www.ebi.ac.uk/ols/ontologies/sio/terms?iri=http%3A%2F%2Fsemanticscience.org%2Fresource%2FSIO_000983&viewMode=All&siblings=false) for Gene -> Disease and Variant -> Disease relationships In...
**Is your feature request related to a problem? Please describe.** The issue is picking a predicate for drugbank descriptions of genes/proteins that are linked to chemicals (keywords like enzyme, carrier,...
**Is your feature request related to a problem? Please describe.** Some mapped relations are in prefix:human_readable_label form, some are in prefix:stable_ID_number form. Some come from a formal ontology, some are...
**Is your feature request related to a problem? Please describe.** How to model the relationship where two things are similar to each other **due to shared annotations/associations with other things**...
I notice a difference between PMC and PMCID, and I'm wondering if this is intentional. I'm also not certain on which to use. Based on the [prefix-map](https://github.com/biolink/biolink-model/blob/68d4e3d7612275d0d7e832a9919bf8666e1d5fde/prefix-map/biolink-model-prefix-map.json#L147), it looks like:...
**Question:** I was looking for guidance on making/editing infores catalog entries for #1391, and I looked at https://github.com/biolink/biolink-model/blob/master/guidelines/information-resource-registry.md. However, this seemed outdated: * discusses a `url` field, when it looks...
**Is your feature request related to a problem? Please describe.** [Link for ICD10](https://github.com/biolink/biolink-model/blob/90b865545aa3ed17e7db0eae84f4c5a58bd22b07/biolink-model.yaml#L79) seems to point at ICD9 instead. Would something like `https://icd.codes/icd10cm/` work? Like https://icd.codes/icd10cm/A000 [Link for ICD9](https://github.com/biolink/biolink-model/blob/90b865545aa3ed17e7db0eae84f4c5a58bd22b07/biolink-model.yaml#L80) could...
when looking at docm data https://myvariant.info/v1/query?q=_exists_:%22docm.pubmed_id%22&field=docm, the pubmed_id value is sometimes a list represented as a string. it appears to be ", "-delimited (both a comma AND a space). It...
I described some queries in https://github.com/biothings/biothings.api/issues/324 that were causing 500 errors. But even if they worked, they wouldn't necessarily do what I had hoped * first example: remove a chembl.drug_mechanism...
I'm trying to query MyChem's drugcentral info and only keep `drugcentral.bioactivity` objects with the matching action_type value (POSITIVE MODULATOR). So I'm setting the parameter `jmespath` to `drugcentral.bioactivity|[?action_type=='POSITIVE MODULATOR']` But if...