Cécile Madjar

Add phase encoding direction and echo number to mri protocol and mri protocol violated scans 24.1 release

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## Brief summary of changes This adds the columns `PhaseEncodingDirections` and `EchoNumber` to the `mri_protocol` and `mri_protocol_violated_scans` tables so that those headers could be used to discriminate between some MRI...

Refactor mri_protocol into scan_type_identification with similar structure as mri_protocol_checks

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## Brief summary of changes This is the LORIS side changes required for the refactoring of the `mri_protocol` table to be like `mri_protocol_checks`. During an imaging call, it was suggested...

Phase contrast imaging acquisition for CSF flow measurements - How to label?

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Hello, I have a project that acquires CSF flow using phase contrast imaging acquisition. I am not entirely sure how to label those images so that they are following the...

[imaging_browser] Modify content of table displaying image headers information

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## Brief summary of changes This PR modifies the information displayed in the headers table. Modifications include: - addition of Image Type, Phase Encoding Direction, Echo Number and Inversion Time...

Generate release SQL patch and add missing entries in the CHANGELOG for 24.1 release

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## Brief summary of changes Generate the release SQL patch, move the patches to Archive and add missing entries in the CHANGELOG for 24.1 release.

[imaging browser] add download buttons for BIDS JSON file (and NIfTI bval, bvec files for DWI)

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## Brief summary of changes Currently, the image download button says 'Download MINC' which is wrong when the file attached is a NIfTI file or another image file format. Instead,...

## Brief summary of changes This fixes the imaging uploader so that when clicking on an upload row, the row is highlighted and the proper log is being displayed in...

## Brief summary of changes This modifies the image panel of the imaging browser to get rid of the weird dangling SNR label when no SNR value is associated to...

# Description Clicking on any upload row will always bring up the logs for the UploadID present in the first row. Example on demo-24.loris.ca: ![Screen Shot 2022-08-18 at 5 38...

Add project user (not dev) notifications for imaging upload i.e. users can opt in from ‘My Preferences’ like Media module and Doc Repo at the moment, devs uploading images using...