Connor Brown

Dear all, our lab loves MEGAHIT. :-] I am attempting to assemble a rather large dataset but run into a consistent error at the local assembly step. Please see the...

prioritize genomes found in previous samples when running genome grist

2

not sure if this is baked in already, but when running many samples from the same experiment, it would be nice if the same species/strain genome representative was prioritized for...

print out important snakemake args when invoking genome-grist --help

1

genome-grist run [ ... ] [ snakemake args ] i had to look around to find what the appropriate snakemake args were (-j and -p) as i could not quickly*...

hi there-- hope you're well! working with genome grist output and realizing that contaminated eukaryotic genomes (where, e.g., deep sequencing of eukaryotic isolates from fecal samples) will likely throw sourmash...

Hi there, I am embarking on putting together a taxonomic database using MAGs with GTDB-style taxonomy annotations. Specifically, I want to combine my MAGs with the current version of GTDB....