Connor Brown

just pinging that I have the same issue. I guess let me know if you found a good solution, lol, I will too...

Hey there. I fixed it for me by doing the described process here: https://github.com/gamcil/clinker/commit/b328fd9635b9ac81b4d6789b49bd8fdfc27985b2 basically, if you comment out the line opening the html plot the html plot, well, doesn't...

I'm running into a similar issue but with contigs. Samples with even only a handful of contigs larger than ~200,000 bp seem to crash mmseqs easy-clust because of memory (segmentation...

have you pushed the most recent version with this fix to conda yet? just asking as i did the default conda installation and got v 1.2.7 something and this option...

I'd say so too! this is the thing from ppanggolin workflow -h usage: ppanggolin workflow [-h] [--fasta FASTA] [--anno ANNO] [--clusters CLUSTERS] [-o OUTPUT] [--basename BASENAME] [--mode {0,1,2,3}] [--coverage COVERAGE]...

thanks! currently I am just handling it on the back end by clustering the genomes of interest. it works OK.

Hello there! Thanks for using mobileOG-db, and great question -- We have now added reproducible [R code](https://github.com/clb21565/mobileOG-db/blob/main/scripts/getElementClassifications.R) for producing element labels for mobileOGs using just the metadata (.csv) file. The...

Hi - thanks for the question - I realize now it is kind of confusing. The R code will take in the mobileOG metadata file and produce a new metadata...

Hi there! Thanks for using mobileOG-db and for your question. We are working on a medium-size update to mobileOG-db that should be out in a few weeks, and then a...

which ARG database were you using? there are rare cases where the annotation is genuinely ambiguous-- for example-- transcriptional regulators that promote resistance and conjugation. We've debated removing those