Chris Fields
Chris Fields
``` UnicodeDecodeError: 'ascii' codec can't decode byte 0xc3 in position 0: ordinal not in range(128) ``` This was detected using Singularity via Nextflow, using [this container](https://depot.galaxyproject.org/singularity/quast:5.0.1--py36pl526ha92aebf_0) Based on a comment...
More a feature request, if it's possible. We're testing a few optimizations for running DIAMOND on our local HPC, and one item that would really help is generating an optional...
## Environment - [ ] Installed via pip (include the output of `pip list`) - [X] Using a conda environment (include the output of `conda list && conda list --revisions`)...
Seeing some Travis test issues centered around `SplicedSeq` and `SeqFeature::Generic`, likely due to access of remote database data. https://travis-ci.org/bioperl/bioperl-live/builds/588215892
The Bioperl mailing lists (as well as all other OBF mail lists) had been having serious issues over the last several months due to heavy spam traffic on the OBF...
Recent changes at NCBI will essentially obsolesce GI in favor of accession.version. A new `idtype` parameter can be used with eutils to allow submitted and returned IDs to be accessions...
This file is in dire need of updating. I have started a Google Sheet on the committers to the repo w/ their names (as best I could glean from past...
Seeing a lot of fails on CPAN Testers involving `Bio::Root::IO` which seem related to `PerlIO::eol`: http://www.cpantesters.org/cpan/report/3a0c8940-440a-11e6-8a33-ab99f1c320fe http://www.cpantesters.org/cpan/report/709f69b2-43fd-11e6-b405-83ce5bc2a771 I am TODO'ing these for the time being but they should be looked...
Various remote server errors popping up. https://gist.github.com/cjfields/9d2a346cf05a7bc3864badcf7f2546a5
Basically a ticket to evaluate whether we can set up a mechanism assessing issues with downstream applications requiring BioPerl.