Chris Clarkson

icon location I am doing a PhD in computational biology at the University of Essex. I am interested mostly in Python and R.

Results 4 issues of Chris Clarkson

varying convolutional window

Hi, I am really interested in your code and have adapted it for my own purposes. However I have just noticed that the convolutional window is not varied.... This is...

0 results returned for query(hub, c("ENCODE","CTCF", "Mus Musculus", "ESC"))

I apologise if this is not a suitable place to ask a question of this type but I could not find any answers on the Bioconductor forum, link to my...

What does it mean when alternate allele is smaller than the reference?

1 comment

Hello, Thank you for producing such a great software! I am wondering about the output of an analysis that I performed. I ran EH on a list of samples and...

HTSlib not parsing CRAM files

Hello I am trying to process 1000s of CRAM files with EHDN (latest version installed via conda). While it works fine for bam files the HTSlib seems to struggle to...