Chao-Chung Kuo

icon indicating a website link https://chaochungkuo.github.io/ icon indicating an email [email protected]

icon company RWTH Uniklinik icon location Aachen, Germany icon location A computational biologist who likes to ask questions about life and pursues the truth.

Results 7 comments of Chao-Chung Kuo

relative paths in IGV session (igv_session.xml)

I encountered the same issue and this solution works for me. A great pipeline and a great community.

TRIPLEXES vs Triplexator

Hi Chiara, TRIPLEXES is very similar to Triplexator and their result should be exactly the same. Below is the help message of `get_TTS`: ``` Subparser 'get_TTS' usage: rgt-TDF get_TTS [-h]...

TDF issue

Hi @iorilondon, Could you show me the header of `Gm3940.fasta`? Is there "chr" in the header? I think I have some clue but not that sure yet.

TDF issue

A fix is committed to the `develop` branch. Please let me know if it helps.

Ubuntu20.4 install hdf5r failed

Hi, I am also curious to see any update on this issue.

fastp trims the qiaseq adapter before UMI extract so no BC pattern is found for UMI extraction

There are more detailed discussion on Slack for this problem: https://nfcore.slack.com/archives/CL66GAJBF/p1741809744454859 My opinion is that for Qiaseq kit, the adapter sequence (AACTGTAGGCACCATC) should be trimmed after UMI extraction, not before,...

rgt-TDF problem

Hi, TDF wasn't updated for some years. It is very likely that your matplotlib version is too new. Please try to downgrade your matplotlib. *Joseph Chao-Chung Kuo* Dr. Chao-Chung Kuo...