Christopher Frick

Results 5 comments of Christopher Frick

I tried multiple slidebook files and they currently do not work with the aicsimageio==4.2.0

``` from aicsimageio.readers import bioformats_reader bf_reader = bioformats_reader.BioformatsReader(r"20210428_T02_002.sld") ``` ``` --------------------------------------------------------------------------- Exception Traceback (most recent call last) ~\AppData\Local\Continuum\anaconda3\envs\aics_bf2\lib\site-packages\_jpype.cp38-win_amd64.pyd in loci.formats.ImageReader.setId() ~\AppData\Local\Continuum\anaconda3\envs\aics_bf2\lib\site-packages\_jpype.cp38-win_amd64.pyd in loci.formats.FormatReader.setId() ~\AppData\Local\Continuum\anaconda3\envs\aics_bf2\lib\site-packages\_jpype.cp38-win_amd64.pyd in loci.formats.in.SlidebookReader.initFile() Exception: Java Exception The...

I slacked a .sld file to dan and jackson (faster than me trying to clean out my old dropbox). Hope that works. Excited to see .sld support soon hopefully :)

I've done a tiny bit of work with the metadata (yaml files in the img directory) looking for pixel sizes ![image](https://user-images.githubusercontent.com/22375032/183733272-ced62d03-61c0-443e-ac3a-1ae6210d891b.png)

a big dictionary would be cool as a starting point.