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SLDY file format reader

Open toloudis opened this issue 3 years ago • 4 comments

Use Case

SLDY is a newer 3i slidebook file format which AICS will be using. From my understanding it is a chunked format stored as numpy arrays. Not sure yet if the metadata format is documented or where.

Solution

SLDYReader class

toloudis avatar Aug 09 '22 16:08 toloudis

I've done a tiny bit of work with the metadata (yaml files in the img directory) looking for pixel sizes image

cfrick13 avatar Aug 09 '22 18:08 cfrick13

Thanks @cfrick13 I think that hits most of the metadata we want? Only problem is: "what do we return from the metadata property of the AICSImage or Reader objects. I am tempted to say a list of files....?? Or a single big dictionary with the file names as the keys:

{
   "ChannelRecord": {...},
   "ImageRecord": {...},
}

:woman_shrugging: :woman_shrugging:

evamaxfield avatar Aug 09 '22 18:08 evamaxfield

I kinda like the big dictionary idea

toloudis avatar Aug 09 '22 19:08 toloudis

a big dictionary would be cool as a starting point.

cfrick13 avatar Aug 09 '22 21:08 cfrick13