Cristian
Cristian
Good day, Thanks for developing such a great tool. I have created my `.crb` file in our HPC and downloaded it to my laptop where I download the `Cerebro` app....
Good day, I am trying to update a model I created with an older version of scvi `scvi.model.SCVI.convert_legacy_save('./results/reference_signatures/', './results/eference_signatures_updated/')` but get the error below: ``` --------------------------------------------------------------------------- KeyError Traceback (most recent...
Hello @r3fang , I am having trouble running rGREAT. Apparently it is related to #issue108. There seems to be a problem with chromosomes coordinates. I get the next error: ```...
Good day, Following the tutorial for visualization the outputs from chromVAR, I have found an issue when plotting a heatmap of the sample correlation. Below the error: ``` Error in...
Good day, When using `ti_slingshot`, I can give start_id and it runs with no issue but once I add end_id, I get the next error: Output with start_id: ``` Running...
Good day, I am having issues running the monocle container. I have used slignshot and ran with no issues but once I tried with monocle (either tree or ica), I...
Good day! I am having problems magnifying the view of each pathway group using `netVisual_embeddingZoomIn`. When running `netVisual_embeddingZoomIn(cellchat, type = "structural")` i get the error below: ``` Error in base::colSums(x,...
Good day! Thanks for developing this wonderful tool. I am trying to use it on my own scRNA-seq data, and did a trial run before, and work nicely. However, with...
Good day, In previous versions, when using `as.loom`, I could find the UMAP coordinates and all cell info, including cluster names and others. The raw counts were stored properly, but...
Good day, I would like to know whether I can use your tool to check coverage in 10x genomics data. My aim is to check the coverage in some specific...