Cristian

Sorry, after I carefully reading of other issues and the web app, my problem is likely due to the version I used to generate my `crb` file (v1.3). Unfortunately, I...

I have tried to use the docker image but our server does not have installed Docker for security reasons and we use singularity. I could not find how to do...

Hello @r3fang I am also having the same issue. In the beggining I had the the message error mentioned before: ``` Error in UseMethod("runChromVAR", obj): no applicable method for 'runChromVAR'...

Hello @r3fang, I am having the same issue that others reported before. When I want to `runHomer`, it is not able to open the connection to the file on the...

Good day! I have been trying to run the package using `singularity`. I could build the container and I am able to start running the pipeline. I start an interactive...

Unfortunately, that does not seem to be the problem. I own the dir created in `/scratch/` and even after giveing all the permission, still fails.

Finally, I found a way to make it work. I bound the PATH for the singularity container and now it finds the TMP dir. One quick question. The file containing...

An additional question, would you recommend including only protein-coding genes for the discovery of ecotypes? I am using a single-nuclei RNA dataset which has a higher content of non-coding genes...

Thank you very much for your reply and clarify the doubts I had. I have tested the files you modified (EcoTyper_discovery_scRNA.R, ecotypes_assign_samples_scRNA.R,ecotypes_recovery_scRNA.R), and they do add the metadata info in...

Hello @yuifu Yes, the data is in BAM format and all cells are in the file, including other reads that are not used in the analysis but BAM files can...