Carolina Páez

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icon company Oregon State University icon location Corvallis, OR icon location PhD student at Botany and Plant Pathology

Results 3 issues of Carolina Páez

Coordinates must be > 0

1 comment

I've started a run of graphtyper 2.7.2 with a command for a chromosome of my reference: graphtyper genotype reference.fasta --sams=$BAMLIST --sams_index=$BAILIST --region=Chr5_A_fumigatus_Af293 --threads=16 --verbose --avg_cov_by_readlen=$BAMCOV --output=test [[2023-11-16 16:15:47.364] Running the...

Cannot find taxon in data

2 comment

Hi, I'm having problems running my snapp.xml file. I'm not sure if my file was generated correctly. I'm attaching the spec.txt, and the constraints.txt files. I can email you the...

Sanger sequences

2 comment

I was wondering if is possible to use MeShClust with Sanger sequences as input data? I have ~600 sequences of full fungal ITS region ~650 bp. I looked online, however,...