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Sanger sequences

Open carolinapinapaez opened this issue 5 years ago • 2 comments

I was wondering if is possible to use MeShClust with Sanger sequences as input data? I have ~600 sequences of full fungal ITS region ~650 bp. I looked online, however, I couldn't find information about the nature of the data.

Thanks for your help, Carolina Páez

carolinapinapaez avatar Apr 09 '20 15:04 carolinapinapaez

Hi, Carolina.

The only requirement is the your sequences must be in FASTA format. If you still have any issues with the data format please email me a file with few samples, and I will try it out. My email is hzgirgis at buffalo.edu.

Best regards,

Hani Zakaria

hani-girgis avatar Apr 09 '20 15:04 hani-girgis

Awesome!

Thanks for the response.

Best, Carolina

On Thu, Apr 9, 2020 at 8:31 AM Hani Zakaria Girgis [email protected] wrote:

Hi, Carolina.

The only requirement is the your sequences must be in FASTA format. If you still have any issues with the data format please email me a file with few samples, and I will try it out. My email is hzgirgis at buffalo.edu.

Best regards,

Hani Zakaria

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carolinapinapaez avatar Apr 09 '20 18:04 carolinapinapaez